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You will see, below the colored upper surface, even with the naked eye, a thin line of bright green. This is the algal (now called the photobiont) layer. Although a lichen is two different organisms growing together, the form of a thallus is remarkably similar to that of a green leaf. A leaf has a colorless upper layer (epidermis). The lichen has a usually colored upper layer (cortex); it consists of densely packed fungal hyphae. A leaf has a layer below the epidermis, of vertically-elongated green cells closely packed together (the palisade layer). The lichen has green algal or bluegreen algal (cyanobacteria) cells. The fungus feeds on these green cells, but they reproduce faster than they are consumed. The leaf has a lower layer of pale cells forming a very loose network (the spongy mesophyll). The lichen has a loose organization of fungal hyphae (medulla). There may or may not be a lower epidermis (in the leaf) or a lower cortex (in the lichen). Leaves have stomates (doughnut-shaped pairs of cells that open and close, allowing the exchange of oxygen and carbon dioxide). Lichens do not require openings, but frequently have cracks or holes (pseudocyphellae) in the cortex through which hyphae and algae may poke. The lower cortex often produces hairlike rhizines or suction-cup stalks (hapteres) that anchor the lichen to the substrate.
The arrangement of the various layers in the lichen and the leaf are extremely similar, and is the most efficient for the process of photosynthesis. The fact that the end result is obtained from completely different materials is one of the wonders of plant life. For the most part, it is thought that the spores are very infrequently involved in the reproduction of the lichen, but are leftovers from the days long ago when the fungus lived independently. Try to imagine how this curious relationship between fungus and alga began, and how the various lichens evolved over millions of years. This is the great question for which no one yet has the answer.
Apothecia are very important in the recognition of many lichens. They are usually small, rimmed cups or disks, appearing on the surface of the thallus. The margins are sometimes, but not always, the color of the thallus. The disks themselves are almost always a different color. Perithecia also produce spores, but these structures, flask-shaped, with a small opening at the top, are imbedded in the thallus. Apothecia and perithecia produce spores (produced by meiosis) which are diagnostic of species, but they probably play an insignificant role in reproduction, because the lichen must reproduce by fragmentation of a thallus containing both fungus and alga. The strains of algae found in lichens evidently do not occur free-living in nature.